Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22349955_22350030_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22349955 - 22350030

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

TTTGTCCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTGAC

U12 Branch Point Sequence:

ATGCCCTGACCC

Flanking Amino Acid:

QPYGKDGLHSKSVQLNGQPL

Intron Amino Acid Position:

701

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.8

0.82

0.9

77.6

32.3

Major BPS

56.5

0.16

1.1

48.6

36.6

Major PPT

79.6

0.67

0.8

74.1

31.1

Minor 5ss

35.7

-1.6

3.2

45.3

36.6

Minor BPS

51.5

0.03

1.8

63.39

41.7

Associated Gene:

Gene:

HPSE2

Ensembl Gene ID:

ENSAPLG00000027024

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024628

22259389 - 22350960

91572