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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2238737_2238832_R

Intron Information:

Intron Rank:
146105
Intron Class:
major
Intron Phase:
Intron Coordinates:
2238737 - 2238832
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGCTGA
5'SS Class:
major
3'SS Sequence:
TTACCTTTACAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTACCTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.3
58
43.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
64.9
0.34
1.1
65
40.1
Minor 5ss
38.2
-1.3
3.1
47.9
47.7
Minor BPS
74.5
0.77
1.6
84.7
34.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026012
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025437
2237722 - 2239662
1941