Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22388505_22389805_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22388505 - 22389805

Intron Length:

1301

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTGAGTAGG

5'SS Class:

strong_major

3'SS Sequence:

CTTGCACCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTGCAC

U12 Branch Point Sequence:

CCTGCTTGCACC

Flanking Amino Acid:

ADGDFEIVVAGYNGPNLVLK

Intron Amino Acid Position:

236

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

68.8

43.8

Major BPS

52.8

0.07

1.4

66.7

39.9

Major PPT

69.7

0.44

0.9

61.9

33.8

Minor 5ss

29.2

-2.4

2.5

25.2

36.6

Minor BPS

45.5

-0.3

54.01

44.5

Associated Gene:

Gene:

CRTAC1

Ensembl Gene ID:

ENSAPLG00000011099

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046354

22387798 - 22395568

7771

ENSAPLT00000019432

22387798 - 22395568

7771

ENSAPLT00000011556

22387798 - 22395158

7361