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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22393607_22393697_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22393607 - 22393697
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGGGTCCC
5'SS Class:
major
3'SS Sequence:
CCTGTCCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
ACATCCTGATCC
Flanking Amino Acid:
DALEPEGRGTGGAVTDFDGD
Intron Amino Acid Position:
565

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
56.7
42.7
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
74.9
0.56
0.8
68
32.2
Minor 5ss
28.2
-2.5
3
27.8
36.1
Minor BPS
54.1
0.11
1.8
62.78
42.3

Associated Gene:

Gene:
CRTAC1
Ensembl Gene ID:
ENSAPLG00000011099
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046354
22387798 - 22395568
7771
ENSAPLT00000019432
22387798 - 22395568
7771
ENSAPLT00000011556
22387798 - 22395158
7361