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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22394360_22394470_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
22394360 - 22394470
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CCCCCAAACGCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCCAAAC
U12 Branch Point Sequence:
TCTCCCCCAAAC
Flanking Amino Acid:
EEPLVPTPLECGQGFSQHEN
Intron Amino Acid Position:
704

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
47
-0.1
1
50.5
30.4
Major PPT
57.7
0.17
0.9
50.7
30.2
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
47.7
-0.1
2
62.69
42

Associated Gene:

Gene:
CRTAC1
Ensembl Gene ID:
ENSAPLG00000011099
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011556
22387798 - 22395158
7361
ENSAPLT00000046354
22387798 - 22395568
7771
ENSAPLT00000019432
22387798 - 22395568
7771