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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22394514_22394665_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22394514 - 22394665
Intron Length:
152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
ATCCTGTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCACAT
U12 Branch Point Sequence:
CAGTCCACATCC
Flanking Amino Acid:
FSQHENGRCVDTNECTEFPF
Intron Amino Acid Position:
718

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
65.1
0.38
1.1
71.2
35.2
Major PPT
76
0.58
0.9
69.3
36.2
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
44
-0.4
2
52.85
44.2

Associated Gene:

Gene:
CRTAC1
Ensembl Gene ID:
ENSAPLG00000011099
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011556
22387798 - 22395158
7361