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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22397409_22397542_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22397409 - 22397542
Intron Length:
134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCCAATG
5'SS Class:
major
3'SS Sequence:
TGTGCACCAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGAGCAT
U12 Branch Point Sequence:
CAGCCCTGAGCA
Flanking Amino Acid:
FLCMETHYEKVLKKISKYIQ
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65
0.35
1.2
62.6
43.6
Major BPS
49.2
-0
1.5
59.7
46.7
Major PPT
63.3
0.3
1
56.8
38.9
Minor 5ss
36.1
-1.6
3.2
48.6
47.1
Minor BPS
48
-0.1
1.7
55.26
43.1

Associated Gene:

Gene:
GOLGA7B
Ensembl Gene ID:
ENSAPLG00000018711
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027225
22396169 - 22398897
2729