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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22404441_22404986_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22404441 - 22404986
Intron Length:
546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TGTCACCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTCAC
U12 Branch Point Sequence:
GTGACCGCAGCT
Flanking Amino Acid:
FGNSQATPPPVSRICTQCEM
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
57.2
0.18
1.4
63.1
44.5
Major PPT
69.8
0.45
0.9
62.5
34.2
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
42.3
-0.5
2.3
61.99
47.2

Associated Gene:

Gene:
SFRP5
Ensembl Gene ID:
ENSAPLG00000021384
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034793
22403906 - 22405754
1849