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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22405065_22405413_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22405065 - 22405413
Intron Length:
349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTCCCCACGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
CTGTCCCCACGC
Flanking Amino Acid:
MMQQMCSSDFVVKMRIKEVT
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
75.3
34.6
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
68.6
0.42
0.9
62.5
33.5
Minor 5ss
30.4
-2.2
3.2
42.4
44.3
Minor BPS
40
-0.7
2.2
50.74
46

Associated Gene:

Gene:
SFRP5
Ensembl Gene ID:
ENSAPLG00000021384
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034793
22403906 - 22405754
1849