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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22439799_22440142_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22439799 - 22440142
Intron Length:
344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCTCC
5'SS Class:
major
3'SS Sequence:
TTCCTGTTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
TCCTTCCTATTG
Flanking Amino Acid:
PSVLQGLRALSMCEVLAPGL
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
64.6
36.2
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
79.7
0.67
0.8
72
37.9
Minor 5ss
39.8
-1.1
2.9
48.2
42.1
Minor BPS
45.9
-0.4
1.9
50.75
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015404
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016100
22439538 - 22442855
3318