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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22440218_22440762_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22440218 - 22440762
Intron Length:
545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCCCTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CTTGTTTTGATT
Flanking Amino Acid:
KAIFQEVHVQSLLQLDRHTV
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
83.1
30.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
78.4
0.64
0.7
69.4
31.4
Minor 5ss
35.6
-1.6
3
47.8
47.9
Minor BPS
59.5
0.38
1.4
73.17
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015404
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016100
22439538 - 22442855
3318