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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22440833_22441013_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22440833 - 22441013
Intron Length:
181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTGAG
U12 Branch Point Sequence:
GTGTCCTGCACC
Flanking Amino Acid:
ITNFMGTREEELKGLGADFT
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
65.9
40.1
Major BPS
46.9
-0.1
1.7
42.8
49.4
Major PPT
88.7
0.87
0.6
84.3
23.6
Minor 5ss
24.4
-2.9
3.1
29.4
43.3
Minor BPS
55.7
0.16
2
68.13
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015404
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016100
22439538 - 22442855
3318