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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22442108_22442291_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22442108 - 22442291
Intron Length:
184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TCTCTCTGATCC
Flanking Amino Acid:
SAKLDALQTLTACCAIYGQK
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
66.1
45
Major BPS
79
0.72
1
69
38.9
Major PPT
85.4
0.8
0.7
80.1
25.2
Minor 5ss
31.8
-2.1
3.1
36.6
41.8
Minor BPS
51.1
0.01
1.7
64.26
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015404
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016100
22439538 - 22442855
3318