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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22448804_22448981_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22448804 - 22448981
Intron Length:
178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCCC
5'SS Class:
major
3'SS Sequence:
TCTCTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAG
U12 Branch Point Sequence:
GAGCCCTCAGCT
Flanking Amino Acid:
WKVFLGVDVPRHWLTRVLLP
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
63.8
40.7
Major BPS
48.4
-0.1
1.5
56.9
40.5
Major PPT
78.6
0.64
0.7
72.6
25.7
Minor 5ss
31.4
-2.1
3.3
42.6
44.4
Minor BPS
48.8
-0
1.8
64.46
45

Associated Gene:

Gene:
ZDHHC16
Ensembl Gene ID:
ENSAPLG00000012896
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013426
22448689 - 22451830
3142