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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22449586_22450121_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22449586 - 22450121
Intron Length:
536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGACAT
5'SS Class:
major
3'SS Sequence:
TGTCCTGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGGTGAC
U12 Branch Point Sequence:
TTTGGGTGACCT
Flanking Amino Acid:
KDRLQVAANQTYYQTPPPTF
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.64
1
67.7
39.3
Major BPS
45.4
-0.2
1.4
34.5
43.7
Major PPT
78.8
0.65
0.9
72.7
37.5
Minor 5ss
26.8
-2.7
3.3
37.9
47
Minor BPS
40.8
-0.6
2.6
68.08
48.5

Associated Gene:

Gene:
ZDHHC16
Ensembl Gene ID:
ENSAPLG00000012896
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013426
22448689 - 22451830
3142