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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22499842_22511537_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22499842 - 22511537
Intron Length:
11696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
CTTCTCTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAG
U12 Branch Point Sequence:
TTCCCCCTGACC
Flanking Amino Acid:
PKSIPRGTERLELNGNNITR
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
65.6
40.2
Major BPS
54.8
0.12
1.6
53.3
44.2
Major PPT
76.5
0.6
0.7
69.6
31.1
Minor 5ss
33.5
-1.9
2.8
46.7
41.7
Minor BPS
60.8
0.32
1.7
72.54
38.5

Associated Gene:

Gene:
SLIT1
Ensembl Gene ID:
ENSAPLG00000013620
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029549
22499353 - 22623948
124596
ENSAPLT00000025886
22499353 - 22623948
124596
ENSAPLT00000014255
22499353 - 22623948
124596
ENSAPLT00000032567
22499353 - 22626132
126780
ENSAPLT00000032183
22499353 - 22623948
124596