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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22511610_22511950_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22511610 - 22511950
Intron Length:
341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
TCCCTCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCAAAA
U12 Branch Point Sequence:
CAAAAGCCAACC
Flanking Amino Acid:
DFSGLKQLRVLQLMENQISM
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.1
59.2
39.9
Major BPS
55.5
0.14
1
61.5
32.5
Major PPT
77.3
0.61
0.7
72.3
25.8
Minor 5ss
33
-1.9
3
47
41.2
Minor BPS
33.5
-1.2
2.2
39.66
38.4

Associated Gene:

Gene:
SLIT1
Ensembl Gene ID:
ENSAPLG00000013620
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025886
22499353 - 22623948
124596
ENSAPLT00000014255
22499353 - 22623948
124596
ENSAPLT00000032567
22499353 - 22626132
126780
ENSAPLT00000032183
22499353 - 22623948
124596
ENSAPLT00000029549
22499353 - 22623948
124596