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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22512023_22612447_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22512023 - 22612447
Intron Length:
100425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTGGT
5'SS Class:
major
3'SS Sequence:
CCTTCTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAT
U12 Branch Point Sequence:
CACAGCTCATTT
Flanking Amino Acid:
AFDDLKELERLDLSENFIQA
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
65.6
40.2
Major BPS
70.9
0.52
1.1
71.4
36.6
Major PPT
78.2
0.63
0.7
72.8
25.4
Minor 5ss
31.9
-2.1
3.4
50
46.3
Minor BPS
39.5
-0.7
2
49.58
44.2

Associated Gene:

Gene:
SLIT1
Ensembl Gene ID:
ENSAPLG00000013620
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029549
22499353 - 22623948
124596