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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22519475_22519938_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22519475 - 22519938
Intron Length:
464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
CTATCTCATCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATTCCCCTATCT
Flanking Amino Acid:
KRASKENIHLLQKCGSPAHM
Intron Amino Acid Position:
450

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.9
32.8
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
74.6
0.55
0.9
66.4
39.6
Minor 5ss
36.3
-1.6
3
48
41.5
Minor BPS
57.9
0.33
2
81.18
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014166
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045796
22518941 - 22537945
19005
ENSAPLT00000014808
22518941 - 22532038
13098