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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22521600_22522317_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22521600 - 22522317
Intron Length:
718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTAAA
U12 Branch Point Sequence:
TGGCAAGCGACT
Flanking Amino Acid:
YLGSRAHTSKDDLDLLTSPG
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
72.3
39
Major BPS
64.8
0.37
1.2
67.9
36.3
Major PPT
82.6
0.73
0.7
75.7
32.8
Minor 5ss
31
-2.2
3.2
39.6
45.9
Minor BPS
35.1
-1
2.3
52.16
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014166
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025305
22520180 - 22537945
17766
ENSAPLT00000019391
22520180 - 22535244
15065
ENSAPLT00000014808
22518941 - 22532038
13098
ENSAPLT00000045796
22518941 - 22537945
19005