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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22522384_22523292_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22522384 - 22523292
Intron Length:
909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTTGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACATAT
U12 Branch Point Sequence:
CTAACCATACAT
Flanking Amino Acid:
MIKHSQKLFKAPAYIRECAR
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
66.4
0.41
1
61.3
37
Major PPT
73.2
0.52
0.9
69.1
37
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
45.7
-0.2
2
64.07
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014166
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025305
22520180 - 22537945
17766
ENSAPLT00000019391
22520180 - 22535244
15065
ENSAPLT00000014808
22518941 - 22532038
13098
ENSAPLT00000045796
22518941 - 22537945
19005