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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22523380_22523924_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22523380 - 22523924
Intron Length:
545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGCAGA
5'SS Class:
major
3'SS Sequence:
GTCCCCTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTCCTTCTGACA
Flanking Amino Acid:
FAPHILWPRNVTANDLQENI
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
67
40
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
78.1
0.63
0.8
68.8
37.1
Minor 5ss
35.7
-1.6
3
44.2
43.7
Minor BPS
49.5
-0
1.6
63.77
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014166
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025305
22520180 - 22537945
17766
ENSAPLT00000019391
22520180 - 22535244
15065
ENSAPLT00000014808
22518941 - 22532038
13098
ENSAPLT00000045796
22518941 - 22537945
19005