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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22525084_22525420_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22525084 - 22525420
Intron Length:
337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTTGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
CTCTGTTGAACA
Flanking Amino Acid:
VSQLIEYLHKNLRAEGLFRV
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
77.7
30.1
Major BPS
69.8
0.49
1
61
37.5
Major PPT
68.5
0.42
1
64.6
40.3
Minor 5ss
31.6
-2.1
3.2
41.8
38.8
Minor BPS
50.6
0.02
1.9
63.35
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014166
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025305
22520180 - 22537945
17766
ENSAPLT00000019391
22520180 - 22535244
15065
ENSAPLT00000014808
22518941 - 22532038
13098
ENSAPLT00000045796
22518941 - 22537945
19005