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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22525502_22529556_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22525502 - 22529556
Intron Length:
4055

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTCCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
GCTGCTTGAACA
Flanking Amino Acid:
FRSLMSLKRKEKGVVFGSPL
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.8
38.7
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
85.2
0.79
0.8
80.9
31.1
Minor 5ss
37.5
-1.4
3
47.8
47.9
Minor BPS
57.6
0.23
1.6
64.58
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014166
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014808
22518941 - 22532038
13098
ENSAPLT00000045796
22518941 - 22537945
19005
ENSAPLT00000025305
22520180 - 22537945
17766
ENSAPLT00000019391
22520180 - 22535244
15065