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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22540893_22541090_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22540893 - 22541090
Intron Length:
198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGACTG
5'SS Class:
major
3'SS Sequence:
TTTCTCCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
CCCACATTAACA
Flanking Amino Acid:
IPLNRAKLNKRKQAKMQGQF
Intron Amino Acid Position:
1110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
62.5
43.9
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
81.7
0.71
0.7
74
31.1
Minor 5ss
28.7
-2.4
3.4
37.9
47
Minor BPS
55.3
0.16
1.7
60.91
44.9

Associated Gene:

Gene:
RRP12
Ensembl Gene ID:
ENSAPLG00000014387
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015082
22539790 - 22548835
9046