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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22541581_22541834_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22541581 - 22541834
Intron Length:
254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTGCA
5'SS Class:
strong_major
3'SS Sequence:
ACTCCTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACACAC
U12 Branch Point Sequence:
CCTGCCAACACA
Flanking Amino Acid:
PEAGSYPQYRAGGSGIHRQL
Intron Amino Acid Position:
1060

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77
31.5
Major BPS
51.2
0.03
0.9
58.7
27.5
Major PPT
82.4
0.73
0.8
76.6
31.3
Minor 5ss
33
-1.9
3.1
42.1
44.5
Minor BPS
40.7
-0.7
2.3
51.13
46.7

Associated Gene:

Gene:
RRP12
Ensembl Gene ID:
ENSAPLG00000014387
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015082
22539790 - 22548835
9046