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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22543118_22543228_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22543118 - 22543228
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTCGG
5'SS Class:
major
3'SS Sequence:
GTGCTCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAG
U12 Branch Point Sequence:
CGGGCGCTGAGG
Flanking Amino Acid:
NLFTKFIRKFGFELVQGLLP
Intron Amino Acid Position:
866

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
59.7
46.7
Major BPS
46
-0.2
1.6
40.4
42.3
Major PPT
69.1
0.43
0.9
62.3
34.7
Minor 5ss
27.7
-2.6
2.7
24
36.8
Minor BPS
32.8
-1.5
2.3
31.11
41.6

Associated Gene:

Gene:
RRP12
Ensembl Gene ID:
ENSAPLG00000014387
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015082
22539790 - 22548835
9046