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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22543930_22544046_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22543930 - 22544046
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCGGC
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTTTCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAG
U12 Branch Point Sequence:
AGTTCCTGAGTC
Flanking Amino Acid:
AFIRFGPTPQEAMERFLLLV
Intron Amino Acid Position:
747

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
66.6
39.6
Major BPS
54.8
0.12
1.6
53.3
44.2
Major PPT
83.5
0.75
0.7
79.4
26.1
Minor 5ss
31.2
-2.1
3.3
41.1
45.6
Minor BPS
56.7
0.19
1.7
66.93
38.4

Associated Gene:

Gene:
RRP12
Ensembl Gene ID:
ENSAPLG00000014387
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015082
22539790 - 22548835
9046