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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22544754_22544920_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22544754 - 22544920
Intron Length:
167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTGC
5'SS Class:
major
3'SS Sequence:
CTCTCTGCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
AGCTACCTACCT
Flanking Amino Acid:
LTSPESSEFARLSLLDLVVA
Intron Amino Acid Position:
600

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
66.7
39.8
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
77.4
0.62
0.9
68.8
37.2
Minor 5ss
37.1
-1.5
3.3
50.7
45.8
Minor BPS
46
-0.2
2.1
65.02
44.8

Associated Gene:

Gene:
RRP12
Ensembl Gene ID:
ENSAPLG00000014387
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015082
22539790 - 22548835
9046