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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22545331_22545447_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22545331 - 22545447
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCGGGGGC
5'SS Class:
major
3'SS Sequence:
CTTCTCACCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TCCTTCTCACCC
Flanking Amino Acid:
RTLIHRGCETDAERAEVGRF
Intron Amino Acid Position:
526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.1
0.31
1.4
60.5
38.3
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
75
0.56
0.8
66.5
34.2
Minor 5ss
23.6
-3
3.4
32.5
42.5
Minor BPS
49.9
-0
1.9
61.43
44.4

Associated Gene:

Gene:
RRP12
Ensembl Gene ID:
ENSAPLG00000014387
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015082
22539790 - 22548835
9046