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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22546285_22546361_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22546285 - 22546361
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
CCTGTCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTCAC
U12 Branch Point Sequence:
CCTCGGTCACCT
Flanking Amino Acid:
GKQCHPIMRKCLQSLCDLRL
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
49
-0
1.3
52.4
43.3
Major PPT
72
0.5
0.8
65.4
30.4
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
35.9
-0.9
2.5
52.75
48.1

Associated Gene:

Gene:
RRP12
Ensembl Gene ID:
ENSAPLG00000014387
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015082
22539790 - 22548835
9046