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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22546699_22546844_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22546699 - 22546844
Intron Length:
146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCGACT
5'SS Class:
major
3'SS Sequence:
TTTGCTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGTTTTTTACCA
Flanking Amino Acid:
VVSAAAQTLENLLTECVAPH
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.2
67.2
43.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
83.6
0.76
0.8
77.8
31
Minor 5ss
39.4
-1.2
3.4
58.7
45.6
Minor BPS
65.7
0.49
1.6
75.16
36.6

Associated Gene:

Gene:
RRP12
Ensembl Gene ID:
ENSAPLG00000014387
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015082
22539790 - 22548835
9046