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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22546957_22547032_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22546957 - 22547032
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGAGA
5'SS Class:
major
3'SS Sequence:
CGTCCTTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
TCTGTCTCACCG
Flanking Amino Acid:
TMEKAHVNLGRLQKDLCWAH
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
65.7
41.7
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
73.7
0.53
0.8
65
36.3
Minor 5ss
24.8
-2.9
3.1
30.4
43
Minor BPS
46.8
-0.3
2
54.4
46.9

Associated Gene:

Gene:
RRP12
Ensembl Gene ID:
ENSAPLG00000014387
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015082
22539790 - 22548835
9046