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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22547304_22547557_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22547304 - 22547557
Intron Length:
254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CGTGTCCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
CCTTCCTGACCC
Flanking Amino Acid:
LLRVMTLSHVLVTACAMQAF
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.8
77.5
30.7
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
76.7
0.6
0.9
69.4
36.8
Minor 5ss
31.9
-2.1
3.3
40.3
40.2
Minor BPS
57
0.2
1.8
66.78
44.8

Associated Gene:

Gene:
RRP12
Ensembl Gene ID:
ENSAPLG00000014387
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015082
22539790 - 22548835
9046