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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22547686_22547989_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22547686 - 22547989
Intron Length:
304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGGAC
5'SS Class:
major
3'SS Sequence:
TCCACTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCACAA
U12 Branch Point Sequence:
TGCTGCTCCACT
Flanking Amino Acid:
FCVQEIEKAGGAKEATTTLH
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
67.6
38
Major BPS
50.7
0.02
1.2
61
37.5
Major PPT
70.5
0.46
0.8
61.5
34.9
Minor 5ss
28.4
-2.5
3.7
40.2
46.2
Minor BPS
46.4
-0.2
2.4
68.65
47.8

Associated Gene:

Gene:
RRP12
Ensembl Gene ID:
ENSAPLG00000014387
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015082
22539790 - 22548835
9046