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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22548129_22548230_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22548129 - 22548230
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CAAACTTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TGCTCCTACACC
Flanking Amino Acid:
LSFCVHTKPKVRKAAQYGVC
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
74.9
35.3
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
64.2
0.32
0.9
54.3
40.8
Minor 5ss
30
-2.3
2.7
36.3
40.6
Minor BPS
52.7
0.07
2.1
66.74
45

Associated Gene:

Gene:
RRP12
Ensembl Gene ID:
ENSAPLG00000014387
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015082
22539790 - 22548835
9046