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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22548348_22548442_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
22548348 - 22548442
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
GCCCCTGCCGTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TGGTGCTGATGT
Flanking Amino Acid:
CSGSTSALRWVLSCLATLLR
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
81.3
32.8
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
59.5
0.21
0.8
53.2
31
Minor 5ss
34.4
-1.8
2.8
37.5
40.1
Minor BPS
42.5
-0.4
2.3
61.26
48

Associated Gene:

Gene:
RRP12
Ensembl Gene ID:
ENSAPLG00000014387
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015082
22539790 - 22548835
9046