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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2256623_2286562_R

Intron Information:

Intron Rank:
133104
Intron Class:
major
Intron Phase:
Intron Coordinates:
2256623 - 2286562
Intron Length:
29940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AATTCATAGATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.6
1.05
0.7
81.4
32.7
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
85
0.79
0.7
79.7
25.9
Minor 5ss
34.5
-1.8
2.9
43.8
43.9
Minor BPS
48.7
-0.1
1.9
62.49
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018844
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047693
2255376 - 2287090
31715