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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2260188_2265697_R

Intron Information:

Intron Rank:
133096
Intron Class:
major
Intron Phase:
Intron Coordinates:
2260188 - 2265697
Intron Length:
5510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGGG
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
69.5
41.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89
0.88
0.7
89.1
27.6
Minor 5ss
31.4
-2.1
3.2
40.6
45.6
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018844
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045249
2259183 - 2304275
45093
ENSAPLT00000042844
2259183 - 2322955
63773