About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22612520_22612641_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22612520 - 22612641
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTGGC
5'SS Class:
major
3'SS Sequence:
CTTTCTCCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCAGCAA
U12 Branch Point Sequence:
GTCCCAGCAACG
Flanking Amino Acid:
AFRGATDLKNLQLDKNQISC
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.1
60
39.4
Major BPS
41.8
-0.5
1.3
43.3
37.8
Major PPT
82.3
0.73
0.7
77.8
24.1
Minor 5ss
30.5
-2.2
3.2
44.4
43.5
Minor BPS
40.2
-0.8
2.3
47.31
45.1

Associated Gene:

Gene:
SLIT1
Ensembl Gene ID:
ENSAPLG00000013620
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032183
22499353 - 22623948
124596
ENSAPLT00000029549
22499353 - 22623948
124596
ENSAPLT00000025886
22499353 - 22623948
124596
ENSAPLT00000014255
22499353 - 22623948
124596
ENSAPLT00000032567
22499353 - 22626132
126780