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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22612950_22613187_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22612950 - 22613187
Intron Length:
238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
TGTCCACCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
AGCCTCTGACCC
Flanking Amino Acid:
SFNHMPKLRTFRLHSNHLFC
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
57.9
41.2
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
69.9
0.45
0.9
62.9
33.3
Minor 5ss
29.2
-2.4
3.2
37.1
41.7
Minor BPS
45.7
-0.3
1.7
51.51
39.2

Associated Gene:

Gene:
SLIT1
Ensembl Gene ID:
ENSAPLG00000013620
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014255
22499353 - 22623948
124596
ENSAPLT00000032567
22499353 - 22626132
126780
ENSAPLT00000032183
22499353 - 22623948
124596
ENSAPLT00000029549
22499353 - 22623948
124596
ENSAPLT00000025886
22499353 - 22623948
124596