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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22613352_22613672_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22613352 - 22613672
Intron Length:
321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGGGG
5'SS Class:
major
3'SS Sequence:
GCTTTCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAA
U12 Branch Point Sequence:
CCCTTTGCAAGC
Flanking Amino Acid:
EIQKNEFSCSGQTEGARAQL
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
56.6
42.5
Major BPS
65.8
0.39
1.4
77.7
37.1
Major PPT
75
0.56
0.8
66
35.9
Minor 5ss
23.3
-3.1
3.2
25.4
39.4
Minor BPS
37.2
-0.9
2.1
40.33
40.6

Associated Gene:

Gene:
SLIT1
Ensembl Gene ID:
ENSAPLG00000013620
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014255
22499353 - 22623948
124596
ENSAPLT00000032567
22499353 - 22626132
126780
ENSAPLT00000032183
22499353 - 22623948
124596
ENSAPLT00000029549
22499353 - 22623948
124596
ENSAPLT00000025886
22499353 - 22623948
124596