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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22613821_22614337_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22613821 - 22614337
Intron Length:
517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTGTG
5'SS Class:
major
3'SS Sequence:
TTTCCTATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
CAGCCCTCACCT
Flanking Amino Acid:
PANLPETMTEIRLELNGIKS
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
74.3
36.2
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
86.6
0.82
0.7
81.5
28.7
Minor 5ss
33.3
-1.9
3.4
44.7
43.5
Minor BPS
48.1
-0
1.9
62.89
46.7

Associated Gene:

Gene:
SLIT1
Ensembl Gene ID:
ENSAPLG00000013620
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029549
22499353 - 22623948
124596
ENSAPLT00000025886
22499353 - 22623948
124596
ENSAPLT00000014255
22499353 - 22623948
124596
ENSAPLT00000032567
22499353 - 22626132
126780
ENSAPLT00000032183
22499353 - 22623948
124596