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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22614410_22614539_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22614410 - 22614539
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGGGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAAAAAT
U12 Branch Point Sequence:
GTGAGGCCACCT
Flanking Amino Acid:
AFSPYKKLRRIDLSNNQISE
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
78.2
36.4
Major BPS
48
-0.1
1.2
53.6
38.7
Major PPT
76.7
0.6
1
72.6
42.4
Minor 5ss
38.7
-1.3
3.4
53.8
43.6
Minor BPS
29.2
-1.5
2.4
46.18
45

Associated Gene:

Gene:
SLIT1
Ensembl Gene ID:
ENSAPLG00000013620
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029549
22499353 - 22623948
124596
ENSAPLT00000025886
22499353 - 22623948
124596
ENSAPLT00000014255
22499353 - 22623948
124596
ENSAPLT00000032567
22499353 - 22626132
126780
ENSAPLT00000032183
22499353 - 22623948
124596