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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22614787_22614908_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22614787 - 22614908
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGGCTC
5'SS Class:
major
3'SS Sequence:
CCTTCCCCGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGCCAC
U12 Branch Point Sequence:
CCAGCCTCACCT
Flanking Amino Acid:
VFGGLFALQLLLLNANKINC
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.2
61.1
43.5
Major BPS
52.3
0.06
1.4
64.2
43
Major PPT
69.2
0.43
0.9
62
34.8
Minor 5ss
38.2
-1.3
3.5
60.8
43.7
Minor BPS
46.7
-0.1
2
60.42
48.8

Associated Gene:

Gene:
SLIT1
Ensembl Gene ID:
ENSAPLG00000013620
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032183
22499353 - 22623948
124596
ENSAPLT00000029549
22499353 - 22623948
124596
ENSAPLT00000025886
22499353 - 22623948
124596
ENSAPLT00000014255
22499353 - 22623948
124596
ENSAPLT00000032567
22499353 - 22626132
126780