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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22615447_22615755_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22615447 - 22615755
Intron Length:
309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TGCCCTCGCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTGCAG
U12 Branch Point Sequence:
AGCCCCCGAGCC
Flanking Amino Acid:
CSAKEQYFIPGTEDYQLNSE
Intron Amino Acid Position:
501

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
73.3
36.4
Major BPS
37.4
-0.7
1.7
42.8
49.4
Major PPT
66.3
0.37
0.9
60.9
35.1
Minor 5ss
30.8
-2.2
3.3
41.8
45
Minor BPS
42
-0.6
1.9
49.37
39.9

Associated Gene:

Gene:
SLIT1
Ensembl Gene ID:
ENSAPLG00000013620
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029549
22499353 - 22623948
124596
ENSAPLT00000025886
22499353 - 22623948
124596
ENSAPLT00000014255
22499353 - 22623948
124596
ENSAPLT00000032567
22499353 - 22626132
126780
ENSAPLT00000032183
22499353 - 22623948
124596