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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22616102_22616294_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22616102 - 22616294
Intron Length:
193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGGATC
5'SS Class:
major
3'SS Sequence:
CTCCTCCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCCCAG
U12 Branch Point Sequence:
CCTGTCCCAGCC
Flanking Amino Acid:
IFKKLPHLKKINLSNNKVSE
Intron Amino Acid Position:
574

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
75
34.7
Major BPS
42.3
-0.4
1.7
52.1
45.2
Major PPT
79.2
0.66
0.7
73.1
25.2
Minor 5ss
33.8
-1.8
3.3
47.5
41.6
Minor BPS
39.3
-0.8
2
46.29
43

Associated Gene:

Gene:
SLIT1
Ensembl Gene ID:
ENSAPLG00000013620
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029549
22499353 - 22623948
124596
ENSAPLT00000025886
22499353 - 22623948
124596
ENSAPLT00000014255
22499353 - 22623948
124596
ENSAPLT00000032567
22499353 - 22626132
126780
ENSAPLT00000032183
22499353 - 22623948
124596