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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22617905_22618515_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22617905 - 22618515
Intron Length:
611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
CTCCTCCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCCCAA
U12 Branch Point Sequence:
TCCTCGGCCACC
Flanking Amino Acid:
PRGIPKNVTELYLDGNQFTQ
Intron Amino Acid Position:
770

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
62.6
36.1
Major BPS
46.7
-0.2
1.2
52.4
34
Major PPT
79.2
0.66
0.7
73.1
25.2
Minor 5ss
31.4
-2.1
3.2
45.9
42.3
Minor BPS
35.6
-1.1
2.8
49.59
47.1

Associated Gene:

Gene:
SLIT1
Ensembl Gene ID:
ENSAPLG00000013620
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025886
22499353 - 22623948
124596
ENSAPLT00000032567
22499353 - 22626132
126780
ENSAPLT00000032183
22499353 - 22623948
124596
ENSAPLT00000029549
22499353 - 22623948
124596