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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22618880_22620013_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22618880 - 22620013
Intron Length:
1134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTGCG
5'SS Class:
major
3'SS Sequence:
GCTTCCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAG
U12 Branch Point Sequence:
GGGCCCCCAGCT
Flanking Amino Acid:
SFTNMSQLTTLAIGANPLYC
Intron Amino Acid Position:
817

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
63.1
41.5
Major BPS
39.5
-0.6
1.5
43.7
39.4
Major PPT
72.7
0.51
0.8
65.9
30.2
Minor 5ss
35.9
-1.6
3.2
51.6
44.8
Minor BPS
42
-0.5
2
56.85
44.6

Associated Gene:

Gene:
SLIT1
Ensembl Gene ID:
ENSAPLG00000013620
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032183
22499353 - 22623948
124596