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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_22619161_22619270_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22619161 - 22619270
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
CTGCTCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGATCAC
U12 Branch Point Sequence:
GCTGCGATCACG
Flanking Amino Acid:
AFEGLRSLRLLSLHGNDISS
Intron Amino Acid Position:
818

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
67.9
38.9
Major BPS
50.8
0.02
1.2
55.1
40.4
Major PPT
74.5
0.55
0.8
69
31.5
Minor 5ss
36.9
-1.5
3.3
55
42.2
Minor BPS
37.8
-1.1
2.5
44.34
47.3

Associated Gene:

Gene:
SLIT1
Ensembl Gene ID:
ENSAPLG00000013620
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032567
22499353 - 22626132
126780
ENSAPLT00000029549
22499353 - 22623948
124596
ENSAPLT00000014255
22499353 - 22623948
124596